NEWS - WORKSHOP "HT-resequencing in Populus"

WORKSHOP "HT-resequencing in Populus" A joint Evoltree & NovelTree & EnergyPoplar Meeting

12-14/05/2010, Udine (Italy)

 

Organised by UNIUD (Michele Morgante and Giusi Zaina)

 

Department of Agriculture and Environmental Sciences (DiSA) University of Udine

Via delle Scienze, 208 33100 Udine, Italy


 

 Agenda

 

Wednesday, the 12th of May

 

14.00 Meeting at the Hotel Cristallo (we'll pick you up at the entrance of the Hotel and drive to IGA)

14.30 Introductory talk: “New sequencing technologies and their impact on genetic diversity analysis”, by Prof. Michele Morgante

15.15 The sequencing facilities at IGA and the sequencing process (from sample to sequence data), by Federica Cattonaro

16.00 – 16.15 Coffee break

16.15 Sequence analysis pipeline, by Cristian Del Fabbro

17.00 Reference-guided assembly: considerations on both DNA and RNA, by Simone Scalabrin

17.45 De novo assembly: combining de novo and reference-guided assemblies, by Francesco Vezzi

18.30 End of the first session. Dinner downtown on your own.

 

Thursday, the 13th of May

 

9.00 Meeting at the Hotel Cristallo (we'll pick you up at the entrance of the Hotel and drive IGA)

9.30 Variant detection: SNPs, small SVs and large SVs, by Simone Scalabrin

10.30 Detection of rare variants, by Sara Pinosio

11.30 – 11.45 Coffee break

11.45 Report on HT-resequencing in Populus at UNIUD/IGA, by Stefania Giacomello

12.30 Report on HT-resequencing in Populus at INRA, by Patricia Fevre-Rampant

13.00 - 14.30 Lunch at the Restaurant and Pizzeria “La Tessitura”

14.30 CLC: overview and simulations, by Stefania Giacomello and Giusi Zaina

16.00 – 16.30 Coffee break

16.30 Discussion on the selected resequencing strategy: decision on data analysis (SNP discovery and P. nigra consensus sequence assembly), result display and sharing.

18.00 End of the second session. Social dinner.

20.00 Meet downtown for a dinner together in a typical Italian place, Matteotti restaurant. 

 

Friday, the 14th of May

 

9.00 Meeting at the Hotel Cristallo (we'll pick you up at the entrance of the Hotel and drive to IGA)

9.30 Sequence display using GBrowse, by Simone Scalabrin.

10.30 Discussion on the future perspectives: genotyping, mapping approaches.

11.30 – 11.45 Coffee break

11.45 CLC: overview and simulations (continue) 13.00 Conclusion of the workshop and departures

 

 

Contact person: Giusi Zaina

Tel : +39 0432558652, Mobile: +39 3331608792 Fax : +39 0432558603

e-mail: giusi.zaina@uniud.it

UNIVERSITY OF UDINE

DIPARTIMENTO DI SCIENZE AGRARIE E AMBIENTALI

Via delle Scienze 208 - 33100 Udine

and

APPLIED GENOMICS INSTITUTE (IGA)

c/o PARCO TECNOLOGICO „L. DANIELI‟

Via Linussio 51 - 33100 Udine

 

 

 List of participants 


7 europa